PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004887
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 374aa    MW: 42563.9 Da    PI: 8.2294
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004887genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05210229120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  + C++C+k+F+r  n++ H+
  Lus10004887 210 FACSICSKTFNRYNNMQMHM 229
                  78*****************9 PP

2zf-C2H216.52.4e-05294316123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +Cgk+F  k + ++H +++
  Lus10004887 294 FSCRKCGKTFAVKGDWRTHEKNC 316
                  89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-5206233No hitNo description
PfamPF139122.7E-4210229IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-5210229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.45210237IPR007087Zinc finger, C2H2
SMARTSM003550.17210232IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
SMARTSM00355190257289IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.23E-5280314No hitNo description
Gene3DG3DSA:3.30.160.603.4E-4281314IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035532294314IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808294314IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGLRDLYHLT QTPNSTHPPT FIEWLKPSSS ISDHKHPPFL GHQQVRDHHH LMAIYLQKEE  60
DDQEEEASTK CLPLLSKLMS TQEHHKDRNF KIRDDPIKEG VDQESEAEAE DIEVTSSIPA  120
ASPTNNYSSS NNSTSSTSVE VKQEVKMFDD EEVNVALHIG LPNKNNKVLE LKEPKMVKYG  180
GNWERKSSIN RENRFWIPTP AQILVGPMQF ACSICSKTFN RYNNMQMHMW GHGSEFRKGP  240
DSLKGTQPAA MLRLPCYCCA QGCKNNINHP RAKPLKDFRT LQTHYKRKHG SKAFSCRKCG  300
KTFAVKGDWR THEKNCGKLW YCTCGSDFKH KRSLKDHIRS FGKGHSPHPS LEGFEDEKEC  360
VTSTGSDNDF TCS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045037.11e-137PREDICTED: zinc finger protein WIP3 isoform X1
SwissprotQ9SGD11e-123ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLB9HQX31e-137B9HQX3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s14590.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-122WIP domain protein 3